Analysis Computers

Owned by Andrew Vaughan
Last updated: Nov 21, 2023
2 min read

Light Microscopy Facility Computers

Deep Thought

Location: Room 2.19A, Medawar Building

Offline analysis PC for general deconvolution, processing of data from the Carl Zeiss Multiphoton and Nikon NSTORM microscopes

  • Dell Precision T7600
  • Windows 7 64-bit
  • 2x Intel XEON CPU E5-2620 2 GHz processors, 6 cores 12 logical processors
  • 160 GB RAM
  • AMD Radeon HD 7800 2 GB graphics card
  • 2 TB C drive
  • Software
    • Huygens Essential 16.05 with licences to deconvolve confocal, spinning disc, multiphoton and widefield data
    • Zen 2.1 Sp3 version 14.0.0.201 with modules for Airyscan processing, FRAP analysis, FCS analysis tools (FCS Basis, FCS Extended, FCS PCH) and linear unmixing
    • Nikon NIS-Elements 5.01 with module for processing molecular localisation data from the NSTORM microscope
    • SlideBook 6.0.15 full offline package for 3i spinning disc microscope
    • Volocity 6.3
    • Fiji
    • LAS AF Lite version 2.6.3
    • LAS X version 3.0.1.15878
    • Olympus FV10-ASW Viewer

Contact LM Facility for training and all other enquiries

Zen

Location: Room 2.20, Medawar Building

Offline analysis PC for data from Carl Zeiss Elyra PS1 super-resolution microscope

  • HP Z840
  • Windows 7 64-bit
  • 2x Intel XEON CPU E5-2623, 3 GHz, 4 cores 8 logical processors
  • 64 GB RAM
  • NVidia Quadro K2200 1 GB graphics card
  • 256 GB C drive and 1.5 TB D drive
  • Software
    • Zen 2012 SP5 with analysis modules for PALM, 3D PALM and SIM as well as linear unmixing
    • FlowJo v 10.8.1
    • SlideBook Reader 6.0.4
    • Fiji

Contact: LM Facility for training and all other enquiries

Marvin

Location: Room 2.19A, Medawar Building

Offline analysis PC 

  • Fujitsu D3598-B1
  • Windows 10 Pro
  • Intel(R) Xeon(R) W-2295 CPU @ 3.00GHz, 3000 Mhz, 18 Core(s), 36 Logical Processor(s)
  • 512 GB RAM
  • NVIDIA RTX A4000, 16GB 4DP graphics card
  • 1.8TB C Drive, 3.64TB D, E, F & G Drives
  • Software
    • Imaris 10
    • Huygens Professional
    • Carl Zeiss Zen Blue 3.2 analysis licence for LSM 900 Airyscan 2. Includes Airyscan Processing, 3DXL and Direct Processing.
    • LAS X 3.5.5
    • Fiji

Contact LM Facility for training and all other enquiries

Electron Microscopy Facility Computers

Beast

Location: Room 2.19A, Medawar Building

  • SuperMicro X8DA3
  • Windows 7 64-bit
  • 2x Intel XEON CPU X5650 2.67 GHz, 6 cores, 12 logical processors
  • 96 GB RAM
  • NVidia Quadro K6000 1 GB graphic card
  • 100 GB C drive, 1 TB D drive, 4 TB F drive
  • Software
    • Imaris 7.6.5
    • Amira 6
    • iTEM
    • Graphpad Prism 7
    • R 3.2
    • Volocity 6.3
    • LAS AF Lite 2.4.1
    • Fiji

Contact Jemima Burden

Son of Beast

Location: Room 2.19A, Medawar Building

  • SuperMicro X8DA3
  • Windows 7 64-bit
  • 2x Intel XEON CPU X5650 2.67 GHz, 6 cores, 12 logical processors
  • 96 GB RAM
  • NVidia GeForce GTX 580 1 GB graphics card
  • 111 GB C drive, 896 GB D drive, 4 TB F drive
  • Software
    • Amira 6
    • iTEM
    • Graphpad Prism 7
    • R 3.1.3
    • Volocity 6.3
    • Nikon NIS-Elements 4.6
    • SID4Bio
    • Fiji

Contact Jemima Burden