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Although questionnaire responses can be set to anonymous, Moodle records when a student answers a question in the course log, so you may wish to use the Feedback tool instead, as this doesn't record when a student responds in the Moodle logs. Using the Feedback tool ensures staff cannot see who responded at a particular time using the Moodle course reports. The alternative is to set the questionnaire up in one centralised course as a public questionnaire and then link to it from the courses where students will answer the questions. The repsonses responses will only be available from the centralised course where the questionnaire was initially set up and therefore, only staff with access to this course will be able to see the responses, meaning they will be anonymous, providing the staff on the course where students answer the questionnaire, don't also have access to the course where the questionnaire data is held.